Computational Biology
Algorithms and models: dynamic-programming alignment, phylogenetics and hidden Markov models.
Difficulty
Tags
| Status | Problem Title | Difficulty | Tags | Action |
|---|---|---|---|---|
| Longest Shared Motif | Advanced | Longest Common Substring Motif Dynamic Programming | Solve | |
| Consensus and Profile Matrix | Advanced | Consensus Profile Matrix Alignment | Solve | |
| Approximate Motif Matching | Advanced | Motif Mismatches Approximate Matching | Solve | |
| Global Alignment Score with Affine Gap Penalty | Advanced | Global Alignment Affine Gap Dynamic Programming | Solve | |
| Local Alignment Score (Smith-Waterman) | Advanced | Local Alignment Smith-Waterman Dynamic Programming | Solve | |
| Neighbor Joining: First Pair to Merge | Advanced | Phylogenetics Neighbor Joining Distance Matrix | Solve | |
| CpG Island Detection with a Hidden Markov Model | Advanced | HMM Viterbi CpG Island | Solve | |
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