Overlap Graphs
Given a collection of DNA strings, build the overlap graph for k = 3: draw a directed edge from string …
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Bioinformatics
Applied sequence analysis: motifs, restriction sites, translation, k-mers and assembly.
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Genome Assembly via de Bruijn Graphs
Given a collection of k-mers all of the same length k, build the de Bruijn graph. Each k-mer becomes an …
Pairwise p-Distance Matrix
You are given several DNA sequences of equal length in multi-FASTA format. For every ordered pair of sequences, compute the …
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